Described herein is a method and system for generating a personalized exercise therapy program that is capable of customizing and providing an exercise program for therapy purposes to a patient. The method of generating a personalized exercise therapy program may include: executing an exercise program generation mode on a terminal logged in with a specific medical staff account; selecting, in the exercise program generation mode, at least one exercise item to be included in an exercise program; setting program information corresponding to the exercise program; generating the exercise program including the exercise item and the program information; storing the exercise program in association with the specific medical staff account; and allocating the exercise program to the patient account, based on receiving, from the specific medical staff account, prescription information for a patient account.