Apparatus and methods for performing qubit readout. In one aspect, an apparatus includes a qubit that operates at a qubit frequency; a frequency controller that is configured to control the qubit frequency and that during a qubit measurement operation is configured to: determine a compensation pulse that when applied to the qubit, counteracts qubit frequency changes during the qubit measurement operation; and apply the determined compensation pulse to the qubit during the qubit measurement operation to maintain the qubit frequency.