The invention discloses a durable roof structure with frost resistance and high ductility and a construction method thereof, belonging to the technical field of roofing, and comprises a base layer, a leveling layer, a flexible waterproof coating, a thermal insulation layer and a crack-resistant and frost-resistant surface layer arranged in sequence from bottom to top. The invention not only has lower requirements on construction conditions and simple operation, but also reduces the generation of large cracks, effectively improves the crack resistance and frost resistance of the roof, improves the roof structure, and is more suitable for the northern cold region.