An orthodontic bracket packaging kit and system includes a base tray, a plurality of pedestals for supporting individual orthodontic brackets, and a protective lid. The kit may also include a blister cover fitting over the orthodontic brackets, helping to hold them in place on top of the individual pedestals. The base tray may have an undulating profile defining a lower level and an upper level, along with a tongue raised towards the lower level. The upper level may be used for placement of maxillary brackets, while the lower level may hold mandibular brackets. The pedestals may be arranged along the base tray in a staggered, radial arc arrangement to facilitate manual retrieval of the brackets. The protective cover may be substantially opaque to curing light wavelengths to protect light curable adhesive pre-applied to the individual brackets.