Provided are a method, system and program from managing failures in a mirrored system. A copy relationship between primary and secondary storage locations, wherein updates to the primary storage locations are copied to the secondary storage locations. A failure is detected preventing an application from writing updates to the primary storage locations. A failure message is received for the application in response to detecting the failure, wherein the failure message is not provided to the application. The copying of updates to the primary storage locations to the secondary storage locations is suspended. The failure message is provided to the application in response to suspending the copying.