A clip control system is described. The invention in a first embodiment is a clip control system comprising a stuffer/clipper comprising a reader and a processing unit and having an operating parameter, a clip package mountable to the stuffer/clipper and holding a plurality of clips, and information encoded in the clip package and readable by the reader, the processing unit configured to receive the information and to set the operating parameter based thereon. The clip package is a reel or a canister. In another embodiment, the invention comprises a clip package holding a plurality of clips and being mountable to a stuffer/clipper having a reader. The clip package has information encoded therein and readable by the reader. In either embodiment, the information is encoded in an RFID tag, a bar code, or a magnetic strip. The reader is a RFID reader, a bar code reader, or a magnetic strip reader. The information is product-specific information and can also include the identity of the clip manufacturer.