A pharmacy information and scanned document processing system includes an input processor for receiving data representing a scanned image of a physician prepared order for a medication for a particular patient. At least one repository stores data associating scanned images, patients and electronic records of orders for medication. A data processor uses the at least one repository for associating a first identifier identifying the scanned image with a second identifier identifying a particular patient prior to associating the scanned image with an electronic record of an order for medication for the particular patient. A user interface processor provides data representing at least one display image presenting data indicating the scanned image is associated with a particular patient and in response to user selection of the scanned image, enabling a user to associate a first identifier identifying the scanned image with a second identifier identifying the electronic record of said order for the medication for the particular patient.