A harmonic generation/beam shaping system to generate a shaped beam having a harmonic relationship with a beam generated by a laser, including a first harmonic generation element and a second harmonic generation element arranged sequentially along an axial beam path extending between an input from the laser and an output of the harmonic generation/beam shaping system and at least two beam shaping elements located along the axial beam path. At least one of the least two beam shaping elements is located between the second harmonic generation element and the laser to transform the beam energy profile into a preferred profile to distribute the beam energy across a larger cross sectional area of at least one harmonic generation element or to reduce peaks in the energy distribution profile of the beam, or both, wherein the preferred profile may be a flat-top profile or a Bessel function profile.