System and method for fan tray control and monitor system. According to an embodiment, the present invention provides a fan control system. In the fan control system, one or more fan tray is housed inside a chassis, which provides power to the fan tray. The fan tray includes a communication interface for connecting to a controller module that is external to and separate from the chassis. Through the controller module, a user is able to view information associated with the fan tray. In addition, the user is able to adjust various fan tray parameters through the controller module.