Provided are a method, system, and article of manufacture for managing consistency groups using heterogeneous replication engines replicating data. A common linkage manager issues a prepare to create consistency group command to a first replication manager and a second replication manager, wherein the first and second replication managers issue create consistency group commands to first and second replication engines, respectively, to form a consistency group of data at a first source storage and a second source storage to copy to a first target storage and second target storage, respectively. The first and second replication managers form a first consistency group and a second consistency group of data from the first and second source storages, respectively, that are consistent as of a point-in-time in response to the create consistency group command; transmitting, by the first and second replication managers, the data in the formed first and second consistency groups to a first journal and second journal, respectively. The first and second replication managers commit the data in the first and second consistency groups in the first and second journals to the first and second target storages, respectively, in response to the first and second replication managers receiving a commit command.