A control system for an engine having a cylinder is disclosed having an engine valve movable to regulate a fluid flow of the cylinder and an actuator associated with the engine valve. The control system also has a sensor configured to generate a signal indicative of an amount of an air/fuel mixture remaining within the cylinder after completion of a first combustion event and a controller in communication with the actuator and the sensor. The controller may be configured to compare the amount with a desired amount, and to selectively regulate the actuator to adjust a timing of the engine valve associated with a subsequent combustion event based on the comparison.