A method for manufacturing a fuel cell separator, including: forming by a PVD method a precious metal layer on a surface of a substrate, as a fuel cell separator, made of Ti or a Ti alloy, wherein the precious metal layer includes at least one precious metal selected from Ru, Rh, Pd, Os, Ir, Pt and Au and has a thickness of 2 nm or more, and a heat treatment wherein the substrate on which the precious metal layer was formed in the precious metal layer forming is subjected to a heat treatment at a predetermined heat treatment temperature and under a predetermined oxygen partial pressure. According to the method, a fuel cell separator made of Ti or a Ti alloy having excellent corrosion resistance, good adhesion of a precious metal layer, low contact resistance, and further excellent productivity can be produced.