A medical image processing apparatus capable of aligning, among plural series of images, slice images included in the series easily in a short time. The medical image processing apparatus is connected to at least one display unit 3 that displays a medical image on a screen based on inputted image data, for correlating anatomically tomographic positions of axial images among plural series of images, and includes: a standard coordinate system and feature quantity storage unit 22 for storing a standard coordinate system in which coordinate values correlated to anatomically tomographic positions of an object to be inspected are set; and a feature quantity computing unit 23, a coordinate value searching unit 24, and a slice coordinate determining unit 25 for providing coordinate values in the standard coordinate system to the axial images included in each of the plural series of images.