The fuel cell system includes a fuel cell stack, a fuel cell temperature sensor for measuring the internal temperature of the fuel cell, a voltage sensor for measuring the power generation voltage of the fuel cell, a current sensor for measuring the current flowing from the fuel cell, a radiator for radiating heat generated by the fuel cell, a fan attached to the radiator for controlling the heat radiation amount, a cooling water pump for increasing the pressure of a cooling fluid, a bypass valve for controlling the cooling fluid amount entering the radiator, and a controller, on the basis of the voltage information measured by the voltage sensor, the temperature information measured by the temperature sensor, and the current information measured by the current sensor, for controlling at least one of the operation amount of the cooling water pump, the operation amount of the fan, and the cooling fluid amount flowing through the bypass valve.