Provided is a satellite network communication system based on Second Generation Digital Video Broad-casting via Satellite (DVB-S2). A method for encapsulating transmission data in a digital satellite communication system includes: determining whether a time at which a reference time information packet has to be inserted into a packet data unit is arrived, in the digital satellite communication system; and if the time at which the reference time information packet has to be inserted into the packet data unit is arrived, transforming the packet data unit in the form of a baseband data packet including the reference time information packet. Therefore, by allowing transmission of Network Clock Reference (NCR) information in a satellite communication environment based on Generic Steam Encapsulation (GSE), bidirectional satellite communications are possible.