Disk drive spindle jitter is comprised of electrical noise, error due to pair pole asymmetry, and random disk speed variances. Error caused by pair pole asymmetry can be identified and compensated for by detecting over a single rotation of a rotor a plurality of zero cross signals. These signals can be statistically analyzed over a period of a plurality of revolutions of the rotor so as to identify the systematic error caused by pair poles. Once identified, this pair pole error can be used to modify zero cross signals and/or modify commutation signal driving the disk so as to arrive at a more accurate determination of disk speed and to precisely control the speed of the disk.