A printer operating method enables a controller to identify process direction errors in an optical imaging system. The method includes identifying a printhead roll error for each printhead in a plurality of printheads in a printer, moving each printhead by an amount that corrects the printhead roll error for the corresponding printhead, generating a plurality of dashes on media with the plurality of printheads as the media moves past the plurality of printheads, identifying a position for each dash in the process direction from image data of the plurality of dashes on the media, identifying a displacement in the process direction for each optical detector in a linear array of optical detectors used to generated the image data of the plurality of dashes, the displacement being identified with reference to the identified positions for the dashes, and operating the printer to compensate for the identified displacements of the optical detectors.