A system and method for preventing anode reactant starvation. The system includes a hydrogen source, an anode bleed valve, and a cell voltage monitor. The system also includes an anode sub-system pressure sensor and a controller configured to control the anode sub-system. The controller determines the average cell voltage and estimates the hydrogen molar fraction and/or nitrogen molar fraction in the anode sub-system. The controller also receives measurement data from the cell voltage monitor and the pressure sensor, and determines whether there is a decrease in the minimum cell voltage in response to changes in the anode pressure. If the controller detects a decrease in the minimum cell voltage in response to changes in the anode pressure, the controller corrects for the decrease by increasing anode pressure and/or by decreasing the molar fraction of nitrogen in the anode sub-system.