There is provided a lithium ion secondary cell excellent in charging and discharging cycle characteristics. A lithium ion secondary cell includes: an electrode body including a positive electrode having a positive electrode active material, a negative electrode having a negative electrode active material, and a separator; and a non-aqueous electrolyte containing a lithium salt as a supporting salt in an organic solvent, the electrode body and the non-aqueous electrolyte being accommodated in a case. The positive electrode active material is a lithium transition metal oxide having a layered structure. The electrolyte contains a compound represented by a chemical formula (I) in an amount of β mol relative to the total content α mol of moisture to be mixed in the cell. β satisfies −1.3≦log(β/α)≦1.