A system and method for enhanced contrast MR imaging include a computer programmed to perform a first scan of an imaging object based on a first fast spin echo (FSE) scan sequence comprising a first series of RF pulses having a first flip angle sequence to acquire a first MR data set and perform a second scan of the imaging object based on a second FSE scan sequence comprising a second series of RF pulses having a second flip angle sequence, wherein the second flip angle sequence is different from the first flip angle sequence to acquire a second MR data set. The computer is further programmed to generate a difference image based on the first and second MR data sets.