A method for operating computer objects and the computer program product thereof are disclosed, and they are utilized to a computer. The computer includes an operating interface which comprises defining a work region, function instruction list and a plurality of computer objects, and parts of the computer objects are chosen. The steps of the method comprises: an input device which is connected to a processing device in the computer for defining the position information of the input device, and a computer object which is chosen on the work region of the operating interface is clicked for operating the computer object; wherein a function instruction, which comprises actions of rotation, zoom in/zoom out, movement, of the computer object, is clicked for users to operate the computer object.