The filtration system of the present invention comprises first and second filtration tanks. The first filtration tank has a first floating filter media layer, a first upper screen with a first aperture ratio, a first inlet, a first backwash water supply source, and a first backwash water outlet means. The second filtration tank has a second floating filter media layer, a second upper screen with a second aperture ratio, a second inlet, an inflow blocking mechanism capable of blocking inflow of water to be treated through the second inlet, a second backwash water supply source, and a second backwash water outlet means. The first aperture ratio is smaller than the second aperture ratio.