A method for interworking messages of heterogeneous, and which includes acquiring a temporary identifier of the sending terminal when the sending terminal is a terminal that subscribes in an IP multimedia subsystem (IMS) without a mobile communication global unique number, in which the temporary identifier is an identifier used for transmitting a short message during an IMS registration valid period of the sending terminal; receiving a session initiation protocol (SIP) based message transmitted by the sending terminal from an IMS based session controller; acquiring a temporary identifier of a receiving terminal based on an SIP based identifier of the receiving terminal encapsulated in the SIP based message; and generating a short message service (SMS) based message based on the received SIP based message, the temporary identifier of the receiving terminal, and the temporary identifier of the transmitting terminal.