The present invention is a multi-modal security checkpoint. The security checkpoint can simultaneously scan for and identify hidden metallic (weapon and shrapnel), non-metallic (explosives and IED), and radioactive/nuclear threats. The security checkpoint can also perform long range facial recognition and detect suspected terrorists. The security checkpoint combines many threat detection technologies into one checkpoint that allows it to be robust and detect a large variety of threats including hidden weapons, explosives, dirty bombs, and other threats.