A multi-waveband OFDM receiver and a frequency offset compensation method and system are disclosed. The method includes: performing single waveband frequency offset estimation on an optical comb line of each order; classifying the optical comb lines into a low mutation optical comb line and a high mutation optical comb line; performing joint frequency offset estimation on the low mutation optical comb line; and performing compensation for a frequency offset of a radio frequency drive signal by using an estimated joint frequency offset. The present invention improves accuracy and reliability of the frequency offset estimation of the radio frequency drive signal, so that the degree of the compensation for the frequency offset of the radio frequency drive signal is more comprehensive and accurate.