According to one embodiment, a magnetic resonance imaging system includes a first imaging apparatus, a first cooling system, a second imaging apparatus, a second cooling system and a cooling control device. The first imaging apparatus includes a first magnet configured to generate a static magnetic field. The first cooling system is configured to cool the first magnet. The second imaging apparatus includes a second magnet configured to generate a static magnetic field. The second cooling system is configured to cool the second magnet. The cooling control device is configured to switch a cooling target of each of the first cooling system and the second cooling system.