Invention Publication
- Patent Title: COMPOSITIONS AND METHODS FOR PAIRWISE SEQUENCING
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Application No.: US17992564Application Date: 2022-11-22
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Publication No.: US20230193354A1Publication Date: 2023-06-22
- Inventor: Sinan ARSLAN , Junhua ZHAO , Molly HE , Samantha SNOW , William LIGHT , Matthew KELLINGER , Michael PREVITE , Michael KIM , Hua YU , Yu-Hsien HWANG-FU , Marco TJIOE , Andrew BODDICKER
- Applicant: Element Biosciences, Inc.
- Applicant Address: US CA San Diego
- Assignee: Element Biosciences, Inc.
- Current Assignee: Element Biosciences, Inc.
- Current Assignee Address: US CA San Diego
- The original application number of the division: US17377279 2021.07.15
- Main IPC: C12Q1/6806
- IPC: C12Q1/6806 ; C12Q1/6834 ; C12Q1/6874 ; G01N21/64 ; C12Q1/6853

Abstract:
The disclosure provides compositions and methods that employ the compositions for conducting pairwise sequencing and for generating concatemer template molecules for pairwise sequencing. The concatemers can be generated using a rolling circle amplification reaction which is conducted either on-support, or conducted in-solution and then distributed onto a support. The rolling circle amplification reaction generates concatemers containing tandem copies of a sequence of interest and at least one universal adaptor sequence. An increase in the number of tandem copies in a given concatemer increases the number of sites along the concatemer for hybridizing to multiple sequencing primers which serve as multiple initiation sites for polymerase-catalyzed sequencing reactions. When the sequencing reaction employs detectably labeled nucleotides and/or detectably labeled multivalent molecules (e.g., having nucleotide units), the signals emitted by the nucleotides or nucleotide units that participate in the parallel sequencing reactions along the concatemer yields an increased signal intensity for each concatemer.
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