Cast semi-permeable membranes made from synthetic polymer used in reverse osmosis, ultrafiltration and microfiltration are treated with a non-leaching antimicrobial agent to prevent its bio-fouling and bacterial breakthrough. The semi-permeable membranes include a polymeric material and a non-leaching antimicrobial agent that is incorporated into and homogeneously distributed throughout the polymeric material. The polymeric material, in the case of one membrane, may be cellulose acetate. In the case of thin film composite polyamide membranes, the antimicrobial agent is incorporated in a microporous polysulfone layer that is sandwiched between a reinforcing fabric and an ultrathin polyamide material. The invention also includes a treatment of flat and hollow fiber semipermeable membranes made with polysulfones and polyvinylidene fluoride.