The invention intends to reduce a frequency at which defects occur in a welding region during friction stir welding, and to improve the reliability of the welding region. The invention resides in a friction stir welding apparatus wherein a distance to the surfaces of the workpieces is detected by a detector, a change of the detected distance is found by a signal processing device, and a tool is rotated by a rotation driving device in a state where a vertical driving device is controlled by a control device so as to suppress the found change, whereby a plastic fluidity of the workpieces is caused to accomplish joining of the workpieces.