A refrigeration system and method for controlling defrost includes a refrigeration case, an evaporator disposed in the refrigeration case, and a condenser and compressor coupled in fluid communication with the evaporator. The condenser is disposed on the refrigeration case and the compressor is a pulse width modulated variable capacity compressor. The system also includes a controller responsive to a load sensor disposed in the refrigeration case and is coupled to the compressor for providing a variable duty cycle control signal to the compressor, wherein the compressor is modulated between a first capacity and a second capacity while operating to adjust the operating capacity of the refrigeration system. The system further includes a module for periodically defrosting the refrigeration system as a function of duty cycle.