The filter assembly for a fuel checker includes a filter housing, a removable screen assembly, a first protective cap and a second protective cap. The filter housing includes a fuel receiving end portion and a fuel exiting end portion. The fuel receiving end portion is shaped to securely attach to a fuel checker. The filter housing defines a volume for containing checked fuel. A removable screen assembly is securely attachable to the fuel exiting end portion. The removable screen assembly includes a flexible screen housing and a filter screen supported by the flexible screen housing. The filter screen is a barrier to water and desired particulate debris. A first protective cap fits over the fuel receiving end portion for containing evaporative fumes while the filter assembly is being stored. A second protective cap fits over the removable screen assembly and protects the screen when the filter assembly is being stored.