A method for automatic initialization of an optical network is provided. A network management system (NMS) performs remote determination of span losses and sets the operating points of network components. The initialization method comprises remotely and automatically setting target gains of optical amplifiers and signal power levels at transmitters and receivers to required operating values. The methods for initialization of the optical network of the embodiments include gain excursion minimization (GEM) for individual channels passing through amplifiers and/or pre-emphasis of the optical link, where channel powers at the transmitters are biased to compensate for the effects of optical amplifiers gain ripple.