A parallel burning system and method is for burning chips of various different bus types in parallel. A computer compiles configuration information according to corresponding connection relations between the chips and the micro controller units, and transmits the configuration information, burning command and burning data to a master micro controller unit of the micro controller units. The master micro controller unit distributes the burning data to slave micro controller units of the micro controller units based on the analyzed configuration information, and controls each slave micro controller unit to activate its burning operation. Then, the slave micro controller units burn the burning data onto the chips connected thereto, and transmit the burning results back to the master micro controller unit after completion of the burning operations. Finally, the master micro controller unit transmits the burning results back to the computer after completion of all the burning operations.