A pressure sensor compensation system for a control system of an engine includes N engine-off pressure measuring modules. The N engine-off pressure measuring modules calculate differences between pressure values of a corresponding one of N pressure sensors and others of the N pressure sensors when the engine is off. The N engine-off pressure measuring modules calculate N corresponding pressure correction values based on the differences, where N is an integer greater than one. N pressure compensating modules generate N corrected pressure values when the engine is on based on N uncorrected pressure values from the N pressure sensors and the N pressure correction values.