A technique utilizes a well filter with a submersible motor-driven pump. The system comprises an elongated filter housing in which a cylindrical filtering element is installed. A fixture is provided for fastening the elongated filter housing to the pump. The filter housing also comprises at least one fluid intake port positioned to allow entry of fluid into the elongated filter housing. A deformable sealing element is installed along an outer surface of the elongated housing and serves to direct fluid flow.