A molecular arrangement magnetic treatment apparatus and method includes an apparatus including a material passageway configured for having material flow therethrough and at least one pair of magnets oriented such that material in the material passageway passes through a magnetic field effect produced by the at least one pair of magnets. Further, each magnet of the at least one pair of magnets is allowed to move independent of each other such that the magnetic field effect at least partially influences relative placement of each magnet of the at least one pair of magnets.