When it is detected that the ignition switch is turned off a short period of time after the ignition switch turned on at the temperature below the freezing point, the charge threshold of a capacitor is changed to a larger charge threshold C for increasing the amount of electrical energy charged in the capacitor based on the charge threshold C. The capacitor is used for performing a scavenging process for a sufficient period of time. At the time of starting operation of the fuel cell system at the temperature below the freezing point the next time, using the electrical energy of the capacitor, a fuel cell is warmed rapidly by a heater or the like to start operation of the fuel cell system.