In one embodiment, the disclosure relates to a method and apparatus for controlling the energy state of a qubit by bringing the qubit into and out of resonance by coupling the qubit to a flux quantum logic gate. The qubit can be in resonance with a pump signal, with another qubit or with some quantum logic gate. In another embodiment, the disclosure relates to a method for controlling a qubit with RSFQ logic or through the interface between RSFQ and the qubit.