A system enhances MR imaging contrast between vessels containing dynamically flowing blood and static tissue using an MR imaging system. The MR imaging system, in response to a heart rate synchronization signal, acquires an anatomical preparation data set representing a spatially non-localized preparation 3D volume in response to a first magnetization preparation pulse sequence. The MR imaging system acquires a spatially localized anatomical imaging data set representing a second imaging volume. The MR imaging system subtracts slice specific MR imaging data of the spatially localized anatomical imaging data set from spatially and temporally corresponding slice specific imaging data of the anatomical preparation data set to derive blood flow indicative imaging data. The temporally corresponding slice specific imaging data comprises data acquired at a substantially corresponding cycle point within a heart beat cycle determined in response to said heart rate synchronization signal. The MR imaging system iteratively repeats the subtraction step for multiple adjacent slices individually comprising a spatially localized anatomical imaging data set to provide a three-dimensional imaging data set.