A method and apparatus for automatically performing regression processing on trace data are provided. With the apparatus and method, call tree data structures are generated for two or more executions of two or more builds of a computer program. The apparatus and method perform a “tree-minimization” operation on each set of call tree data structures for each of the builds to generate minimized call tree data structures for each build of the computer program. The minimized call tree data structures are then subtracted from one another to generate a subtracted minimized call tree data structure. From this subtracted minimized call tree data structure, the portions of the computer program that are different from build to build and which appreciably and consistently affect the difference in execution of the computer program from build to build may be identified. Thus, the analyst's attention is directed to these areas of the computer program code which may be optimized in order to obtain better execution of the computer program.