Apparatus and methods of controlling a frequency-converted diode laser system are disclosed. The diode laser systems can include embodiments of thermally coupled elements facilitating temperature stabilization. Aspects of some methods include monitoring the output of a stabilized diode laser system to reduce noise of the output laser beam. Other aspects of some methods include adjusting the temperature of a frequency converter based on noise in the output beam, and/or the current provided to drive the diode laser. Systems incorporating such control aspects, and others, are also disclosed.