The present invention disclosed a method constructing an intelligent system processing uncertain causal relationship information. It can express, monitor and analyze the causal logic relationship among the different variables in complex systems directly, implicitly or in both way of them under the circumstance of unsure, dynamic, having a logic loop, lacking of statistical data, unclear evidence, mixture of discrete and continuous variables, incomplete knowledge, multi-resource of knowledge. It gave effective bases to solve the problems in the domain of production, monitoring, detection, diagnosis, prediction, et al.