An upgrade controller that compares the contents of a reference database with an upgraded database is described. In one embodiment, the upgrade controller connects to the reference and upgraded database and retrieves the list of tables. For each of the tables, the upgrade controller compares the content of the reference and the upgraded table. The upgrade controller compares the table contents by comparing the contents on a record-by-record basis. In addition, the upgrade controller can use a whitelist of tables and columns to reduce the number of false positive(s) that could be generated during the comparison.