A magnetic resonance imaging apparatus includes a first navigator data processor that generates a first phase profile based on first navigator data acquired by executing a first navigator sequence, generates a position profile indicative of a relationship between a plurality of region positions and time at which the first navigator sequence is executed, and detects a specific position in the position profile. A second navigator data processor generates a second phase profile based on second navigator data acquired by executing a second navigator sequence, detects the position of each region with respect to each second phase profile within a reference range set so as to contain the specific position, based on each second phase profile, and acquires the same as its corresponding position data.