The present invention provides a fuel cell stack with a water drainage structure, which can effectively drain condensed water and prevent water from flowing into unit cells by combining an end anode plate (EAP) and an end cathode plate (ECP), which are formed by modifying an anode plate (AP) and cathode plate (CP) respectively. In doing so, the modified anode plate (AP) and cathode plate (CP) are converted into a dummy cell which is positioned at the end portions of the fuel cell stack.