An exemplary system for minimizing a perceptual disturbance caused by shorted electrodes in an auditory prosthesis system includes a sound processor configured to determine that a first electrode and a second electrode included in a plurality of electrodes implanted in a patient are shorted together, detect that a main electrical stimulation pulse intended only for the first electrode is to be delivered by an auditory prosthesis to the first electrode, and direct, in response to the detecting, the auditory prosthesis to concurrently deliver the main electrical stimulation pulse to the first electrode and one or more compensating electrical stimulation pulses to one or more additional electrodes included in the plurality of electrodes.