A system and method for commissioning a lighting system is provided in which signals from light sensors are filtered in order to determine whether light is received from light fixtures in the lighting system or from external light sources. Alternatively or in addition, signals from light sensors may be filtered to determine the amount of light from external light sources. By filtering the signals from the light sensors, an identification of which light fixtures are colocated with which light sensors may be made even in the presence of light received from external light sources or light from multiple light fixtures in the lighting system. Physical locations of light fixtures and/or sensors may be determined based on detecting the amount of light received from external light sources.