Systems and methods for controlling the parameters of groups of focal planes as focal plane groups in an array camera are described. One embodiment includes a plurality of focal planes, and control circuitry configured to control the capture of image data by the pixels within the focal planes. In addition, the control circuitry includes: a plurality of parameter registers, where a given parameter register is associated with one of the focal planes and contains configuration data for the associated focal plane; and a focal plane group register that contains data identifying focal planes that belong to a focal plane group. Furthermore, the control circuitry is configured to control the imaging parameters of the focal planes in the focal plane groups by mapping instructions that address virtual register addresses to the addresses of the parameter registers associated with focal planes within specific focal plane groups.