Provided is a method of selecting a wavelength of an optical network unit including selecting a pre-loaded default wavelength as an available wavelength candidate or the wavelength that has been changed when a preset wavelength changing condition is satisfied as the available wavelength candidate, acquiring frame synchronization for a downstream signal having the same wavelength as the selected available wavelength candidate, and transmitting a registration request message to an optical line terminal (OLT) from which the downstream signal has been transmitted when the frame synchronization is acquired, assigning the available wavelength candidate to an available wavelength used for communication with the OLT and registering the terminal in the OLT when a registration allowance message is received from the OLT.