The present disclosure relate to photoelectric conversion apparatus and imaging system. The photoelectric conversion apparatus has a plurality of pixels arranged in rows and columns, and each configured to generate a signal by photoelectric conversion, a plurality of holding capacitors arranged correspondingly to the respective columns of the plurality of pixels, and configured to hold signals based on the pixels, a first output line, a second output line, a first switch arranged between the holding capacitor and the first output line, a second switch arranged between the holding capacitor and the second output line, and a column selecting line configured to control the second switch, wherein a wiring structure of a portion at which the column selecting line intersects the first output line is different from a wiring structure of a portion at which the column selecting line intersects the second output line.